Publications

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2024

Joshua S James, Junbiao Dai, Wei Leong Chew, Yizhi Cai. The design and engineering of synthetic genomes . Nat Rev Genet , 2024 Nov . doi: 10.1038/s41576-024-00786-y
Guobin Mao, Qiaoyu Li, Ziying Zhang, Wei Huang, Qian Luo, Junbiao Dai, Weiren Huang, Yingxin Ma. Analyte-induced hindrance in the RCA-assisted CRISPR/Cas12a system for homogeneous protein assays . Anal Chim Acta , 2024 Nov . doi: 10.1016/j.aca.2024.343294
Hao Ye, Guangyu Luo, Zhenwu Zheng, Xiaofang Li, Jie Cao, Jia Liu, Junbiao Dai. Plant synthetic genomics: Big lessons from the little yeast . Cell Chem Biol , 2024 Oct . doi: 10.1016/j.chembiol.2024.08.001
Rui Zhang, Peiyu Shi, Shuyang Xu, Zhe Ming, Zicong Liu, Yuanyuan He, Junbiao Dai, Erika Matunis, Jin Xu, Qing Ma. Soma-germline communication drives sex maintenance in the Drosophila testis . Natl Sci Rev , 2024 Jun . doi: 10.1093/nsr/nwae215
Fei Du, Junbiao Dai, Yuling Jiao. Insights into a functional synthetic plant genome . New Phytol , 2024 Oct . doi: 10.1111/nph.19979
Yunyun Gao, Kai Peng, Defeng Bai, Xiao-Ye Bai, Yujing Bi, Anqi Chen, Baodong Chen, Feng Chen, Juan Chen, Lei Chen, Tong Chen, Wei Chen, Xu Cheng, Yanfen Cheng, Jie Cui, Jingjing Dai, Junbiao Dai, Zhaolai Dai, Ye Deng, Yi-Zhen Deng, Wei Ding, Zhencheng Fang, Wei Fu, Hanbing Gao, Shaohua Gu, Xue Guo, Xuguang Guo, Dongfei Han, Lele He, Yatao He, Hui-Yu Hou, Baolei Jia, Gengjie Jia, Shuo Jiao, Wei Jin, Feng Ju, Zhicheng Ju, Siyuan Kong, Canhui Lan, Bing Li, Da Li, Diyan Li, Jingdi Li, Meng Li, Qi Li, Qiang Li, Wen-Jun Li, Xiaofang Li, Xuemeng Li, Yahui Li, You-Gui Li, Zhibin Liang, Ning Ling, Fufeng Liu, Qing Liu, Shuang-Jiang Liu, Hongye Lu, Qi Lu, Guangwen Luo, Hao Luo, Yuheng Luo, Hujie Lyu, Chuang Ma, Liyuan Ma, Tengfei Ma, Jinfeng Ni, Ziqin Pang, Xiaojing Qiang, Yuan Qin, Qingyue Qu, Chao Ran, Shuqiang Ren, Haitao Shang, Luyang Song, Linyang Sun, Weimin Sun, Liping Tang, Jian Tian, Kai Wang, Mengzhi Wang, Ming-Ke Wang, Tao Wang, Xiao-Yan Wang, Yao Wang, Yiwen Wang, Youshan Wang, Hailei Wei, Hong Wei, Zhong Wei, Tao Wen, Jiqiu Wu, Linhuan Wu, Linkun Wu, Jiao Xi, Bo Xie, Guofang Xu, Jun Xu, Shanshan Xu, Qing Xue, Liping Yan, Haifei Yang, Jun Yang, Junbo Yang, Ruifu Yang, Yalin Yang, Ying-Jie Yang, Xiaofang Yao, Yanpo Yao, Salsabeel Yousuf, Ke Yu, Zhengrong Yuan, Zhilin Yuan, Dong Zhang, Tianyuan Zhang, Weipeng Zhang, Yunzeng Zhang, Zhaonan Zhang, Zhen Zhang, Zhi-Feng Zhang, Shengguo Zhao, Wei Zhao, Maosheng Zheng, Ziqiang Zheng, Xin Zhou, Yuanping Zhou, Zhigang Zhou, Mo Zhu, Yong-Guan Zhu, Haiyan Chu, Yang Bai, Yong-Xin Liu. The Microbiome Protocols eBook initiative: Building a bridge to microbiome research . Imeta , 2024 Mar . doi: 10.1002/imt2.182
Xiaoluo Huang, Junting Cui, Wei Qiang, Jianwen Ye, Yu Wang, Xinying Xie, Yuanzhen Li, Junbiao Dai. Storage-D: A user-friendly platform that enables practical and personalized DNA data storage . Imeta , 2024 Jan . doi: 10.1002/imt2.168
Guangyu Luo, Hao Ye, Mengxuan Xu, Xiaofang Li, Jianxuan Zhu, Junbiao Dai. PpFab: An efficient promoter toolkit in Physcomitrium Patens . Plant Physiol , 2024 Sep . doi: 10.1093/plphys/kiae332
Wenfei Yu, Shuo Zhang, Shijun Zhao, Lian-Ge Chen, Jie Cao, Hao Ye, Jianbin Yan, Qiao Zhao, Beixin Mo, Ying Wang, Yuling Jiao, Yingxin Ma, Xiaoluo Huang, Wenfeng Qian, Junbiao Dai. Designing a synthetic moss genome using GenoDesigner . Nat Plants , 2024 Jun . doi: 10.1038/s41477-024-01693-0
Abdur Rasool, Jingwei Hong, Zhiling Hong, Yuanzhen Li, Chao Zou, Hui Chen, Qiang Qu, Yang Wang, Qingshan Jiang, Xiaoluo Huang, Junbiao Dai. An Effective DNA-Based File Storage System for Practical Archiving and Retrieval of Medical MRI Data . Small Methods , 2024 Oct . doi: 10.1002/smtd.202301585
Guoqiang Wu, Qiaoyu Li, Junbiao Dai, Guobin Mao, Yingxin Ma. Design and Application of Biosafe Coronavirus Engineering Systems without Virulence . Viruses , 2024 Apr . doi: 10.3390/v16050659
Wen Yin, Leyao Li, Yang Yang, Yuxin Yang, Ruijing Liang, Lixin Ma, Junbiao Dai, Guobin Mao, Yingxin Ma. Ultra-Sensitive Detection of the SARS-CoV-2 Nucleocapsid Protein via a Clustered Regularly Interspaced Short Palindromic Repeat/Cas12a-Mediated Immunoassay . ACS Sens , 2024 Jun . doi: 10.1021/acssensors.4c00432
Yuge Feng, Cong Su, Guobin Mao, Baoting Sun, Yizhi Cai, Junbiao Dai*, Yingxin Ma*. When synthetic biology meets medicine . Life Medicine , 2024 Mar . doi: 10.1093/lifemedi/lnae010
Runtao Zhu, Jiao Zhang, Lin Wang, Yunfeng Zhang, Yang Zhao, Ying Han, Jing Sun, Xi Zhang, Ying Dou, Huaxiong Yao, Wei Yan, Xiaozhou Luo, Junbiao Dai, Zhuojun Dai*. Engineering functional materials through bacteria-assisted living grafting . Cell Syst , 2024 Mar . doi: 10.1016/j.cels.2024.02.003
Zhaohua Hou*, Wei Qiang, Xiangxiang Wang, Xiaoxu Chen, Xin Hu, Xuye Han, Wenlu Shen, Bing Zhang, Peng Xing, Wenping Shi, Junbiao Dai*, Xiaoluo Huang*, Guanghou Zhao*. "Cell Disk" DNA Storage System Capable of Random Reading and Rewriting . Adv Sci (Weinh) , 2024 Feb . doi: 10.1002/advs.202305921
Shuangying Jiang*, Zelin Cai, Yun Wang, Cheng Zeng, Jiaying Zhang, Wenfei Yu, Chenghao Su, Shijun Zhao, Ying Chen, Yue Shen, Yingxin Ma, Yizhi Cai*, Junbiao Dai*. High plasticity of ribosomal DNA organization in budding yeast . Cell Rep , 2024 Feb . doi: 10.1016/j.celrep.2024.113742
Guiqi Bi, Shijun Zhao, Jiawei Yao, Huan Wang, Mengkai Zhao, Yuanyuan Sun, Xueren Hou, Fabian B Haas, Deepti Varshney, Michael Prigge, Stefan A Rensing, Yuling Jiao, Yingxin Ma, Jianbin Yan*, Junbiao Dai*. Near telomere-to-telomere genome of the model plant Physcomitrium patens . Nat Plants , 2024 Jan . doi: 10.1038/s41477-023-01614-7
Lian-Ge Chen, Tianlong Lan, Shuo Zhang, Mengkai Zhao, Guangyu Luo, Yi Gao, Yuliang Zhang, Qingwei Du , Houze Lu, Bimeng Li, Bingke Jiao, Zhangli Hu, Yingxin Ma, Qiao Zhao, Ying Wang*, Wenfeng Qian*, Junbiao Dai*, Yuling Jiao*. A designer synthetic chromosome fragment functions in moss . Nat Plants , 2024 Jan . doi: 10.1038/s41477-023-01595-7
Li Cheng, Shijun Zhao, Tianyi Li, Sha Hou, Zhouqing Luo, Jinsheng Xu, Wenfei Yu, Shuangying Jiang, Marco Monti, Daniel Schindler, Weimin Zhang, Chunhui Hou, Yingxin Ma, Yizhi Cai, Jef D Boeke, Junbiao Dai*. Large-scale genomic rearrangements boost SCRaMbLE in Saccharomyces cerevisiae . Nat Commun , 2024 Jan . doi: 10.1038/s41467-023-44511-5
Yao Yu , Qiaoyu Li, Wen Shi , Yuxin Yang, Hongpeng He, Junbiao Dai, Guobin Mao*, Yingxin Ma*. Programmable Aptasensor for Regulating CRISPR/Cas12a Activity . ACS Sens , 2024 Jan . doi: 10.1021/acssensors.3c01881

2023

Wenfei Yu, Junbiao Dai*, Yingxin Ma*. Recent development on DNA & genome synthesis . Current Opinion in Systems Biology , 2023 Nov . doi: 10.1016/j.coisb.2023.100490
Shuangying Jiang#, Zhouqing Luo#, Jie Wu, Kang Yu, Shijun Zhao, Zelin Cai, Wenfei Yu, Hui Wang, Li Cheng, Zhenzhen Liang, Hui Gao, Marco Monti, Daniel Schindler, Linsen Huang, Cheng Zeng, Weimin Zhang, Chun Zhou, Yuanwei Tang, Tianyi Li, Yingxin Ma, Yizhi Cai, Jef D Boeke, Qiao Zhao*, Junbiao Dai*. Building a eukaryotic chromosome arm by de novo design and synthesis . Nat Commun , 2023 Nov . doi: 10.1038/s41467-023-43531-5
Shijie Cao, Leyao Li, Hongwei An, Guobin Mao*, Junbiao Dai, Yingxin Ma*. Development of dual-mode ELISA based on ALP-catalyzed APP hydrolysis for IL-6 detection . J Pharm Biomed Anal , 2023 Nov . doi: 10.1016/j.jpba.2023.115754
Daniel Schindler, Roy S K Walker, Shuangying Jiang, Aaron N Brooks, Yun Wang, Carolin A Müller, Charlotte Cockram, Yisha Luo, Alicia García, Daniel Schraivogel, Julien Mozziconacci, Noah Pena, Mahdi Assari, María Del Carmen Sánchez Olmos, Yu Zhao, Alba Ballerini, Benjamin A Blount, Jitong Cai, Lois Ogunlana, Wei Liu, Katarina Jönsson, Dariusz Abramczyk, Eva Garcia-Ruiz, Tomasz W Turowski, Reem Swidah, Tom Ellis, Tao Pan, Francisco Antequera, Yue Shen, Conrad A Nieduszynski, Romain Koszul, Junbiao Dai, Lars M Steinmetz, Jef D Boeke, Yizhi Cai*. Design, construction, and functional characterization of a tRNA neochromosome in yeast . Cell , 2023 Nov . doi: 10.1016/j.cell.2023.10.015
Junbiao Dai, Huanming Yang, Isak S Pretorius, Patrick Cai, Chantal Yue Shen, Matthew Chang, Yingjin Yuan. A spotlight on global collaboration in the Sc2.0 yeast consortium . Cell Genom , 2023 Nov 9 . doi: 10.1016/j.xgen.2023.100441
Jee Loon Foo, Shohei Kitano, Adelia Vicanatalita Susanto, Zhu Jin, Yicong Lin, Zhouqing Luo, Linsen Huang, Zhenzhen Liang, Leslie A Mitchell, Kun Yang, Adison Wong, Yizhi Cai, Jitong Cai, Giovanni Stracquadanio, Joel S Bader, Jef D Boeke, Junbiao Dai*, Matthew Wook Chang*. Establishing chromosomal design-build-test-learn through a synthetic chromosome and its combinatorial reconfiguration . Cell Genom , 2023 Nov 9 . doi: 10.1016/j.xgen.2023.100435
Yue Shen, Feng Gao, Yun Wang, Yuerong Wang, Ju Zheng, Jianhui Gong, Jintao Zhang, Zhouqing Luo, Daniel Schindler, Yang Deng, Weichao Ding, Tao Lin, Reem Swidah, Hongcui Zhao, Shuangying Jiang, Cheng Zeng, Shihong Chen, Tai Chen, Yong Wang, Yisha Luo, Leslie Mitchell, Joel S Bader, Guojie Zhang, Xia Shen, Jian Wang, Xian Fu, Junbiao Dai, Jef D Boeke, Huanming Yang, Xun Xu, Yizhi Cai*. Dissecting aneuploidy phenotypes by constructing Sc2.0 chromosome VII and SCRaMbLEing synthetic disomic yeast . Cell Genom , 2023 Nov 9 . doi: 10.1016/j.xgen.2023.100364
Weimin Zhang, Luciana Lazar-Stefanita, Hitoyoshi Yamashita, Michael J Shen, Leslie A Mitchell, Hikaru Kurasawa, Evgenii Lobzaev, Viola Fanfani, Max A B Haase, Xiaoji Sun, Qingwen Jiang, Gregory W Goldberg, David M Ichikawa, Stephanie L Lauer, Laura H McCulloch, Nicole Easo, S Jiaming Lin, Brendan R Camellato, Yinan Zhu, Jitong Cai, Zhuwei Xu, Yu Zhao, Maya Sacasa; Build-A-Genome Class; Marcus B Noyes, Joel S Bader, Samuel Deutsch, Giovanni Stracquadanio, Yasunori Aizawa*, Junbiao Dai*, Jef D Boeke*. Manipulating the 3D organization of the largest synthetic yeast chromosome . Mol Cell , 2023 Nov 8 . doi: 10.1016/j.molcel.2023.10.015
Xiangxiang Wang, Yuyu Zhao, Zhaohua Hou, Xiaoxu Chen, Shuangying Jiang, Wei Liu, Xin Hu, Junbiao Dai*, Guanghou Zhao*. Large-scale pathway reconstruction and colorimetric screening accelerate cellular metabolism engineering . Metab Eng , 2023 Nov . doi: 10.1016/j.ymben.2023.09.009
Guobin Mao, Chunmin Qiu, Xing Luo, Yingqi Liang, Liqing Zhao, Weiren Huang*, Junbiao Dai, Yingxin Ma*. Synergistic effect-triggered fluorescence quenching enables rapid and sensitive detection of alkaline phosphatase . Anal Chim Acta , 2023 Sep 1 . doi: 10.1016/j.aca.2023.341510
Xian-En Zhang*, Chenli Liu*, Junbiao Dai*, Yingjin Yuan*, Caixia Gao*, Yan Feng*, Bian Wu*, Ping Wei*, Chun You*, Xiaowo Wang*, Tong Si*. Enabling technology and core theory of synthetic biology . Sci China Life Sci , 2023 Aug . doi: 10.1007/s11427-022-2214-2
Guobin Mao*, Xing Luo, Silu Ye, Xun Wang, Jin He, Jilie Kong, Junbiao Dai, Wen Yin*, Yingxin Ma*. Fluorescence and Colorimetric Analysis of African Swine Fever Virus Based on the RPA-Assisted CRISPR/Cas12a Strategy . Anal Chem , 2023 May . doi: 10.1021/acs.analchem
Abdur Rasool, Qingshan Jiang*, Yang Wang, Xiaoluo Huang, Qiang Qu, Junbiao Dai. Evolutionary approach to construct robust codes for DNA-based data storage . Front Genet , 2023 Mar . doi: 10.3389/fgene.2023.1158337
Stefan A Hoffmann, James Diggans, Douglas Densmore, Junbiao Dai, Tom Knight, Emily Leproust, Jef D Boeke, Nicole Wheeler*, Yizhi Cai*. Safety by design: Biosafety and biosecurity in the age of synthetic genomics . iScience , 2023 Feb . doi: 10.1016/j.isci.2023.106165
Mingwei Lu, Yang Wang, Wei Qiang, Junting Cui, Yu Wang, Xiaoluo Huang*, Junbiao Dai*. Towards high-density storage of text and images into DNA by the “Xiao-Pang” codec system . SCIENCE CHINA-Life Sciences , 2023-1-16 . doi: 10.1007/s11427-022-2252-0

2022

Ling Huang, Jun Ni*, Chao Zhong, Ping Xu, Junbiao Dai, Hongzhi Tang*. Establishment of a salt-induced bioremediation platform from marine Vibrio natriegens . Communications Biology , 2022-12-9 , 5 (1) : 1-9 . doi: 10.1038/s42003-022-04319-3
Siqi Huang#，Weishan Yang#，Silu Ye， Shijie Cao， Yifang Li， Zhaoying Wei，Ka Yan Ngai，Junbiao Dai， Guobin Mao*，Yingxin Ma*. Fluorescence recovery based on synergetic effect for ALP detection . Molecular and Biomolecular Spectroscopy , 2022 , 280 : 121550 . doi: 10.1016/j.saa.2022.121550
Li Cheng#, Xuetong Yue#, Zhaoyu Qin#, Xiaogang Sun, Fuchu He*, Junbiao Dai*, Chen Ding*. GwAAP: A genome-wide amino acid coding-decoding quantitative proteomics system . iScience , 2022-11-2 , 25 (12) : 105471 . doi: 10.1016/j.isci.2022.105471
Guobin Mao#, Yifang Li#, Guoqiang Wu, Silu Ye, Shijie Cao, Wei Zhao, Junnan Lu, Junbiao Dai, Yingxin Ma*. Construction of ratiometric Si-Mn: ZnSe nanoparticles for the immunoassay of SARS-CoV-2 spike protein . Sensors and Actuators: B. Chemical , 2022 , 369 : 132306 . doi: 10.1016/j.snb.2022.132306
Xiaohui Kong, Kun Yan, Pujuan Deng, Haipeng Fu, Hongyao Sun, Wenze Huang, Shuangying Jiang, Junbiao Dai, Qiangfeng Cliff Zhang, Jun-jie Gogo Liu Qiaoran Xi*. LncRNA-Smad7 mediates cross-talk between Nodal/TGF-β and BMP signaling to regulate cell fate determination of pluripotent and multipotent cells . Nucleic Acids Research , 2022-10-14 , 50 (18) : 10526-10543 . doi: 10.1093/nar/gkac780
Guobin Mao#, Silu Ye#, Wen Yin, Yang Yang, Xinghu Ji, Jin He, Yingxia Liu, Junbiao Dai, Zhike He*, Yingxin Ma*. Ratiometric Fluorescent Si-FITC Nanoprobe for Immunoassay of SARS-CoV-2 Nucleocapsid Protein . Nano Research , 2022 , 1-7 . doi: 10.1007/s12274-022-5005-z
Guobin Mao#, Yang Yang#, Shijie Cao#, Silu Ye, Yifang Li, Wei Zhao, Hongwei An, Yingxia Liu*, Junbiao Dai, Yingxin Ma*. Ratiometric fluorescence immunoassay of SARS-CoV-2 nucleocapsid protein via Si-FITC nanoprobe-based inner filter effect . Nano Research , 2022 , 1-8 . doi: 10.1007/s12274-022-4740-5
Xiaolong Feng#, Xiaofan Zhang#, Shuangying Jiang, Yuanwei Tang, Chao Cheng, Parthasarathy Abinand Krishna, Xiaoting Wang, Junbiao Dai, Dan Zhao*, Tian Xia*, Jianyang Zeng*. A DNA-based non-infectious replicon system to study SARS-CoV-2 RNA synthesis . Computational and Structural Biotechnology Joural , 2022 , 20 : 5193-5202 . doi: 10.1016/j.csbj.2022.08.044
Zhenzhen Liang#, Zhouqing Luo#*, Weimin Zhang#, Kang Yu, Hui Wang, Binan Geng, Qing Yang, Zuoyu N, Cheng Zeng, Yihui Zheng, Chunyuan Li, Shihui Yang, Yingxin Ma, Junbiao Dai*. Synthetic refactor of essential genes decodes functionally constrained sequences in yeast genome . iScience , 2022 , 25 (9) : 104982 . doi: 10.1016/j.isci.2022.104982
Yingxin Ma #, Guobin Mao #, Weishan Yang #, Guoqiang Wu, Guoqiang Li, Xiaoying Li, Xin Lin, Junnan Lu, Shijun Zhao, Wei Zhao, Junbiao Dai*, Xian-En Zhang*. Studying bona fide SARS-CoV-2 biology in a BSL-2 biosafety environment using a split-virus-genome system . Science CHINA-Life Science , 2022 , 1-4 . doi: 10.1007/s11427-022-2114-8
Lige Zhang, Huan Liu, Junbiao Dai, Ping Xu, Hongzhi Tang*. Unveiling degradation mechanism of PAHs by a Sphingobium strain from a microbial consortium . mLife , 2022-7-25 , 1 (3) : 287-302 . doi: 10.1002/mlf2.12032
Xin Hu#, Shuangying Jiang#, Feifei Xu#, Cheng Zeng, Xiangxiang Wang, Wei Liu, Aimin Cheng, Chengying Ma, Ning Gao, Yuyu Zhao, Junbiao Dai* and Guanghou Zhao*. Engineering and functional analysis of yeast with a monotypic 40S ribosome subunit . PNAS , 2022 . doi: 10.1073/pnas.2114445119

2021

Shuangying Jiang#，Yuanwei Tang#, Liang Xiang, Xinlu Zhu, Zelin Cai, Ling Li, Yingxi Chen, Peishuang Chen, Yuge Feng, Xin Lin, Guoqiang Li, Jafar Sharif，Junbiao Dai*. Efficient de novo assembly and modification of large DNA fragments . Science CHINA-Life Science , 2021 , 1-11 . doi: 10.1007/s11427-021-2029-0
Junyang Ong#, Reem Swidah#, Macro Monti, Daniel Schindler, Junbiao Dai, Yizhi Cai*. SCRaMbLE: A study of Its Robustness and Challenges through Enhancement of Hygromycin B Resistance in a Semi-Synthetic Yeast . Bioengineering , 2021 , 8 (3) : 42 . doi: 10.3390/bioengineering8030042
Min Li#, Jiashu Wu#, Junbiao Dai, Qingshan Jiang, Qiang Qu, Xiaoluo Huang, Yang Wang*. A self‑contained and self‑explanatory DNA storage system . Scientific Reports , 2021 (11) , 18063 . doi: 10.1038/s41598-021-97570-3
Chongyang Ren#, Yong Liu#, Wenping Wei, Junbiao Dai* and Bangce Ye*. Reconstruction of Secondary Metabolic Pathway to Synthesize Novel Metabolite in Saccharopolyspora erythraea . Frontiers in Bioengineering and Biotechnology , 2021 (9) , 628569 . doi: 10.3389/fbioe.2021.628569
Xiangxiang Wang#, Zhiyong Yue#, Feifei Xu#, Sufang Wang, Xin Hu, Junbiao Dai*, Guanghou Zhao*. Coevolution of ribosomal RNA expansion segment 7L and assembly factor Noc2p specializes the ribosome biogenesis pathway between Saccharomyces cerevisiae and Candida albicans . Nucleic Acids Research , 2021 , 49 (8) : 4655-4667 . doi: 10.1093/nar/gkab218
Liang Xiang,Guoqiang Li,Luan Wen,Cong Su,Yong Liu,Hongzhi Tang,Junbiao Dai*. Biodegradation of aromatic pollutants meets synthetic biology . Synth Syst Biotechnol , 2021 , 6 (3) : 153-162 . doi: 10.1016/j.synbio.2021.06.001
Zhouqing Luo*#, Kang Yu#, Shangqian Xie, Marco Monti, Daniel Schindler, Yuan Fang, Shijun Zhao, Zhenzhen Liang, Shuangying Jiang, Meiwei Luan, Chuanle Xiao, Yizhi Cai* and Junbiao Dai*. Compacting a synthetic yeast chromosome arm . Genome Biology , 2021 , 22 : 5 . doi: 10.1186/s13059-020-02232-8

2020

Hannes Braberg#, Ignacia Echeverria#, Stefan Bohn#, Peter Cimermancic#, Anthony Shiver, Richard Alexander, Jiewei Xu, Michael Shales, Raghuvar Dronamraju, Shuangying Jiang, Gajendradhar Dwivedi, Derek Bogdanoff, Kaitlin K. Chaung, Ruth Hüttenhain, Shuyi Wang, David Mavor, Riccardo Pellarin, Dina Schneidman, Joel S. Bader, James S. Fraser, John Morris, James E. Haber, Brian D. Strahl, Carol A. Gross, Junbiao Dai, Jef D. Boeke∗, Andrej Sali∗, Nevan J. Krogan∗. Genetic interaction mapping informs integrative structure determination of protein complexes . Science , 2020 , 370 (6522) : 1294-+ . doi: 10.1126/science.aaz4910
Reem Swidah, Jamie Auxillos, Wei Liu, Sally Jones, Ting-Fung Chan,Junbiao Dai, and Yizhi Cai. SCRaMbLE-in: A Fast and Efficient Method to Diversify and Improve the Yields of Heterologous Pathways in Synthetic Yeast . Methods in Molecular Biology , 2020 , 2205 : 305-327 . doi: 10.1007/978-1-0716-0908-8_17
Matthew J. MacKay, Anna C. Hooker, Ebrahim Afshinnekoo, Marc Salit, Jason Kelly, Jonathan V. Feldstein, Nick Haft, Doug Schenkel, Subhalaxmi Nambi, Yizhi Cai, Feng Zhang, George Church, Junbiao Dai, Cliff L. Wang, Shawn Levy, Jeff Huber, Hanlee P. Ji, Alison Kriegel, Anne L. Wyllie, Christopher E. Mason. The COVID-19 XPRIZE and the need for scalable, fast, and widespread testing . Nature Biotechnology , 2020 , 38 (9) : 1021-1024 . doi: 10.1038/s41587-020-0655-4
Zhouqing Luo, Shuangying Jiang, and Junbiao Dai. Chromosomal Rearrangements of Synthetic Yeast by SCRaMbLE . Methods in Molecular Biology , 2020 , 2196 : 153-165 . doi: 10.1007/978-1-0716-0868-5_12
Shuangying Jiang, Zhouqing Luo, and Junbiao Dai. Use YeastFab to Construct Genetic Parts and Multicomponent Pathways for Metabolic Engineering . Methods in Molecular Biology , 2020 , 2196 : 153-165 . doi: 10.1007/978-1-0716-0868-5_12
Yang Li#, Dan-yun Lai#, Hai-nan Zhang#, He-wei Jiang#, Xiaolong Tian#, Ming-liang Ma, Huan Qi, Qing-feng Meng, Shu-juan Guo,Yanling Wu, Wei Wang, Xiao Yang, Da-wei Shi, Jun-biao Dai, Tianlei Ying*, Jie Zhou* and Sheng-ce Tao*. Linear epitopes of SARS-CoV-2 spike protein elicit neutralizing antibodies in COVID-19 patients . Cellular&Molecular Immunology , 2020 , 17 (10) : 1095-1097 . doi: 10.1038/s41423-020-00523-5
Shuangying Jiang, Shijun Zhao, Zelin Cai, Yuanwei Tang, Junbiao Dai*. Synthetic yeast genomes for studying chromosomal features . Current Opinion in Systems Biology , 2020 , 23 : 1-7 . doi: 10.1016/j.coisb.2020.09.001
Junbiao Dai∗, Jef D. Boeke, Zhouqing Luo, Shuangying Jiang, Yizhi Cai∗. Sc3.0: revamping and minimizing the yeast genome . Genome Biology , 2020 , 21 : 205 . doi: 10.1186/s13059-020-02130-z
Jiaying Zhang, Junjie Luo, Jieyan Chen, Junbiao Dai*, Craig Montell*. The Role of Y Chomosome Genes in Male Fertility in Drosophila melanogaster . Genetics , 2020 , 215 : 623-633 . doi: 10.1534/genetics.120.303324
Zhongyi Lu#, Ting Fu#, Tianyi Li, Yang Liu, Siyu Zhang, Jinquan Li, Junbiao Dai, Eugene V.Koonin, Guohui Li, Huiying Chu*, Meng Li*. Coevolution of Eukaryote-like Vps4 and ESCPT-III Subunits in the Asgard Archaea . mBio , 2020 , 11 (3) : 300417-20 . doi: 10.1128/mBio.00417-20
Zhouqing Luo, Stefan A. Hoffmann, Shuangying Jiang, Yizhi Cai∗,Junbiao Dai∗. Probing eukaryotic genome functions with synthetic chromosomes . Experimental Cell Research , 2020 , 390 (1) : 111936 . doi: 10.1016/j.yexcr.2020.111936

2019

Weimin Zhang#, Xuedi Zhang#, Zhaoyu Xue#, Yijie Li#, Qing Ma, Xiangle Ren, Jiaying Zhang, Songhua Yang, Lijuan Yang, Menghua Wu, Mengda Ren, Rongwen Xi, Zheng Wu, Ji-Long Liu, Erika Matunis, Junbiao Dai*, Guanjun Gao*. Probing the function of metazoan histones with a systematic library of H3 and H4 mutants . Developmental Cell , 2019 , 48 : 1-14 . doi: 10.1016/j.devcel.2018.11.047
Jamie Y. Auxilos, Eva Garcia-Ruiz, Sally Jones, Tianyi Li, Shuangying Jiang, Junbiao Dai, Yizhi Cai*. Multiplex Genome Engineering for Optimizing Bioproduction in Saccharomyces cerevisiae . Biochenmistry , 2019 , 58 : 1492-1500 . doi: 10.1021/acs.biochem.8b01086
Junbiao Dai*. Investigating loss of heterozygosity in a SCRaMbLEd yeast genome . Science CHINA-Life Science , 2019 . doi: 10.1007/s11427-019-9517-5
Shuangying Jiang, Tongsi, Junbiao Dai*. Whole-Genome Regulation for Yeast Metabolic Engineering . Small methods , 2019 , 1900640 . doi: 10.1002/smtd.201900640
Yicong Lin#, Xinzhi Zou#, Yihui Zheng, Yizhi Cai*, Junbiao Dai*. Improving Chromosome Synthesis with a Semiquantitative Phenotypic Assay and Refined Assembly Strategy . ACS Synthetic Biology , 2019 . doi: 10.1021/acssynbio.8b00505
Qingwen Jiang, Weinmin Zhang, Chenghao Liu, Yicong Lin, Qingyu Wu, Junbiao Dai*. Dissecting PCNA function with a systematically designed mutant library in yeast . Journal of Genetics and Genomics , 2019 , 26 : 301-313 . doi: 10.1016/j.jgg.2019.03.014

2018

Shuangying Jiang, Junbiao Dai*. Inevitability or contingency: how many chromosomes do we really need? . SCIENCE CHINA-Life Sciences , 2018 , 1-4 . doi: 10.1007/s11427-018-9425-8
Zhouqing Luo, Qing Yang, Binan Geng, Shuangying Jiang, Shihui Yang, Xiaozheng Li, Yizhi Cai, Junbiao Dai*. Whole genome engineering by synthesis . SCIENCE CHINA-Life Sciences , 2018 , 1-13 . doi: 10.1007/s11427-018-9403-y
Yibo Xiao, Xi He, Qi Ma, Yue Lu, Fan Bai, Junbiao Dai*, Qingyu Wu*. Photosynthetic Accumulation of Lutein in Auxenochlorella protothecoides after Heterotrophic Growth . Marine drugs , 2018 , 16 (8) . doi: 10.3390/md16080283
Li Cheng, Chengxi Liu, Shuangying Jiang, Sha Hou, Jinguo Huang, Ziqing Chen, Yangyang Sun, Huan Qi, Hewei Jiang, Jingfang Wang, Yiming Zhou, Daniel M Czajkowsky, Junbiao Dai*, Shengce Tao*. Cell Lysate Microarray for Mapping the Network of Genetic Regulators for Histone Marks . Molecular & Cellular Proteomics , 2018 . doi: 10.1074/mcp.RA117.000550
Yan Liu, Fan Yang, Siying Li, Junbiao Dai*, Haiteng Deng*. Glutaredoxin deletion shortens chronological life span in Saccharomyces cerevisiae via ROS mediated Ras/PKA activation . Journal of Proteome Research , 2018 . doi: 10.1021/acs.jproteome.8b00012
Wei Liu, Zhouqing Luo, Yun Wang, Nhan Pham, Laura Tuck, Irene Pérez Pi, Longying Liu, Yue Shen, Chris French, Manfred Auer, Jon Marles-Wright, Junbiao Dai*, Yizhi Cai*. Rapid pathway prototyping and engineering using in vitro and in vivo synthetic genome SCRaMbLE-in methods . Nature Communications , 2018 , 9 : 1936 . doi: 10.1038/s41467-018-04254-0
Zhouqing Luo#, Lihui Wang#, Yun Wang, Weimin Zhang, Yakun Guo, Yue Shen, Linghuo Jiang, Qingyu Wu, Chong Zhang, Yizhi Cai*, Junbiao Dai*. Identifying and characterizing SCRaMbLEd synthetic yeast using ReSCuES . Nature Communications , 2018 , 9 (1930) . doi: 10.1038/s41467-017-00806-y
Daniel Schindler, Junbiao Dai, Yizhi Cai*. Synthetic genomics: a new venture to dissect genome fundamentals and engineer new functions . Current Opinion in Chemical Biology , 2018 , 8 (46) : 56-62 . doi: 10.1016/j.cbpa.2018.04.002 . [Epub ahead of print]
Yikang Zhou#, Gang Li#, Junkai Dong#, Xin-hui Xing, Junbiao Dai*, Chong Zhang*. MiYA, an efficient machine-learning workflow in conjunction with the YeastFab assembly strategy for combinatorial optimization of heterologous metabolic pathways in Saccharomyces cerevisiae . Metabolic Engineering , 2018 , 47 : 294-302 . doi: 10.1016/j.ymben.2018.03.020 . [Epub ahead of print]
Sha Hou, Qin Qin, Junbiao Dai*. Wicket: a versatile tool for the integration and optimization of exogenous pathway in Saccharomyces cerevisiae . ACS Synthetic Biology, , 2018 , 7 (3) : 782-788 . doi: 10.1021/acssynbio.7b00391
He Huang#, Zhouqing Luo#, Shankang Qi#, Jing Huang#, Peng Xu, Xiuxuan Wang, Li Gao, Fangyi Li, Jian Wang, Zhucheng Chen, Lunzhi Dai*, Junbiao Dai*, Yingming Zhao*. Landscape of the Regulatory Elements for Lysine 2-Hydroxyisobutyrylation Pathway . Cell Research , 2018 , 28 (1) : 111-125 . doi: 10.1038/cr.2017.149

2017

Ze-Xiong Xie, Duo Liu, Bing-Zhi Li, Meng Zhao, Bo-Xuan Zeng, Yi Wu, Yue Shen, Tao Lin, Ping Yang, Junbiao Dai, Yizhi Dai, Huangming Yang, Yingjin Yuan*. Design and chemical synthesis of eukaryotic chromosomes . Chemical Society Reviews , 2017 , 46 (23) : 7191-7207 . doi: 10.1039/c7cs00208d
Shuangying Jiang#, Yan Liu#, Caiyue Xu, Yun Wang, Jianhui Gong, Yue Shen, Qingyu Wu, Jef D. Boeke and Junbiao Dai*. Dissecting Nucleosome Function with a Comprehensive Histone H2A and H2B Mutant Library . G3 (Bethesda) , 2017 , 7 (12) : 3857-3866 . doi: 10.1534/g3.117.300252
Shuangying Jiang, Yan Liu, Ann Wang, Yiran Qin, Maoguo Luo, Qingyu Wu, Jef D. Boeke* and Junbiao Dai*. Construction of comprehensive dosage-matching core histone mutant libraries for Saccharomyces cerevisiae . Genetics , 2017 , 207 (4) : 1263-1273 . doi: 10.1534/genetics.117.300450
Jing Huang#, Zhouqing Luo#, Wantao Ying#, Qichen Cao, He Huang, Junkai Dong, Qingyu Wu, Yingming Zhao, Xiaohong Qian*, Junbiao Dai*. 2-hydroxyisobutyrylation on histone H4K8 is regulated by glucose homeostasis in Saccharomyces cerevisiae . Proceedings of the National Academy of Sciences of the United States of America , 2017 , 114 (33) : 8782-8787 . doi: 10.1073/pnas.1700796114
Guo Cheng, Hongmei Xue, Jiao Luo, Hong Jia, Lishi Zhang, Junbiao Dai, Anette E. Buyken. Relevance of the dietary glycemic index, glycemic load and genetic predisposition for the glucose homeostasis of Chinese adults without diabetes . Scientific Reports , 2017 , 7 (1) : 400 . doi: 10.1038/s41598-017-00453-9
Junbiao Dai*, Yizhi Cai, Yinjing Yuan, Huanming Yang, Jef D Boeke. Whole genome synthesis: from poliovirus to synthetic yeast . Quantitative Biology , 2017 , 5 (1) : 105–109 . doi: 10.1007/s40484-017-0101-x
Weimin Zhang#, Guanghou Zhao#, Zhouqing Luo#, Yicong Lin, Lihui Wang, Yakun Guo, Ann Wang, Shuangying Jiang, Qingwen Jiang, Jianhui Gong, Yun Wang, Sha Hou, Jing Huang, Tianyi Li, Yiran Qin, Junkai Dong, Qin Qin, Jiaying Zhang, Xinzhi Zou, Xi He, Li Zhao, Yibo Xiao, Meng Xu, Erchao Cheng, Ning Huang, Tong Zhou, Yue Shen, Roy Walker, Yisha Luo, Zheng Kuang, Leslie A. Mitchell, Kun Yang, Sarah M. Richardson, Yi Wu, Bing-Zhi Li, Ying-Jin Yuan, Huanming Yang, Jiwei Lin, Guo-Qiang Chen, Qingyu Wu, Joel S. Bader, Yizhi Cai, Jef D. Boeke, Junbiao Dai*. Engineering the ribosomal DNA in a megabase synthetic chromosome . Science , 2017 , 355 (6329) . doi: 10.1126/science.aaf3981
Zhouqing Luo, Junbiao Dai*. Synthetic genomics: the art of design and synthesis . Chinese Journal of Biotechnology , 2017 , 33 (3) : 331-342 . doi: 10.13345/j.cjb.160411
Ting Yuan#, Yakun Guo#, Junkai Dong, Tianyi Li, Tong Zhou, Kaiwen Sun, Mei Zhang, Qingyu Wu, Zhen Xie, Yizhi Cai, Limin Cao and Junbiao Dai*. Construction, characterization and application of genome-wide promoter part library in Saccharomyces cerevisiae . Frontiers of Chemical Science and Engineering , 2017 , 11 (1) : 107-116 . doi: 10.1007/s11705-017-1621-7
Yue Shen, Yun Wang, Tai Chen, Feng Gao, Jianhui Gong, Dariusz Abramczyk, Roy Walker, Hongcui Zhao, Shihong Chen, Wei Liu, Yisha Luo, Carolin A. Müller, Adrien Paul-Dubois-Taine, Bonnie Alver, Giovanni Stracquadanio, Zhouqing Luo, Yanqun Fan, Baojin Zhou, Bo Wen, Fengji Tan, Yujia Wang, Jin Zi, Zexiong Xie, Bingzhi Li, Leslie A. Mitchell, Kun Yang, Sarah M. Richardson, Yingjin Yuan, Christopher E. French, Conrad A. Nieduszynski, Romain Koszul, Adele L. Marston, Hui Jiang, Jian Wang, Joel S. Bader, Junbiao Dai, Jef D. Boeke, Xun Xu, Yizhi Cai*, Huanming Yang*. Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome . Science , 2017 , 355 (6329) . doi: 10.1126/science.aaf4791
Yizhi Cai* and Junbiao Dai*. Methods to synthesize large DNA fragments for synthetic yeast genome . Cold Spring Harbor Protocols , 2017 , 2017 (3) . doi: 10.1101/pdb.prot080978 . (*Co-corresponding author)
Guillaume Mercy, Julien Mozziconacci, Vittore F. Scolari, Kun Yang, Guanghou Zhao, Agn.s Thierry, Yisha Luo, Leslie A. Mitchell, Michael Shen, Yue Shen, Roy Walker, Weimin Zhang, Yi Wu, Ze-xiong Xie, Zhouqing Luo, Yizhi Cai, Junbiao Dai, Huanming Yang, Ying-Jin Yuan, Jef D. Boeke, Joel S. Bader, Heloise Muller*, Romain Koszul*. 3D organization of synthetic and scrambled chromosomes . Science , 2017 , 355 (6329) . doi: 10.1126/science.aaf4597
Leslie A. Mitchell, Ann Wang, Giovanni Stracquadanio, Zheng Kuang, Xuya Wang, Sarah Richardson, J. Andrew Martin, Roy Walker, Yisha Luo, Hongjiu Dai, Kang Dong, Zuojian Tang, Yizhi Cai, David Fenyö, Junbiao Dai, Joel S. Bader, Jef D. Boeke*. Synthesis, debugging and consolidation of synthetic chromosomes in yeast: synVI and beyond . Science , 2017 , 355 (6329) . doi: 10.1126/science.aaf4831
Yi Wu, Bing-Zhi Li, Meng Zhao, Leslie A. Mitchell, Ze-Xiong Xie, Qiu-Hui Lin, Xia Wang, Wen-Hai Xiao, Ying Wang, Xiao Zhou, Hong Liu, Xia Li, Ming-Zhu Ding, Duo Liu, Lu Zhang, Bao-Li Liu, Xiao-Le Wu, Fei-Fei Li, Xiu-Tao Dong, Bin Jia, Wen-Zheng Zhang, Guo-Zhen Jiang, Yue Liu, Xue Bai, Tian-Qing Song, Yan Chen, Si-Jie Zhou, Rui-Ying Zhu, Feng Gao, Zheng Kuang, Xu-Ya Wang, Michael Shen, Kun Yang, Giovanni Stracquadanio, Sarah M. Richardson, Yicong Lin, Lihui Wang, Roy Walker, Yi-Sha Luo, Ping-Sheng Ma, Huan-Ming Yang, Yi-Zhi Cai, Junbiao Dai, Joel S. Bader, Jef D. Boeke, Ying-Jin Yuan*. Bug mapping and fitness testing of chemically synthesized chromosome X . Science , 2017 , 355 (6329) . doi: 10.1126/science.aaf4706

2016

Peng Xu, Chengmin Li, Zhihong Chen, Shuangying Jiang, Shilong Fan, Jiawei Wang, Junbiao Dai, Ping Zhu* and Zhucheng Chen*. The NuA4 core complex acetylates nucleosomal histone H4 through a double recognition mechanism . Molecular Cell , 2016 , 63 (6) : 965-75 . doi: 10.1016/j.molcel.2016.07.024
Kejia Wen, Lijuan Yang, Tuanlin Xiong, Chao Di, Danhui Ma, Menghua Wu, Zhaoyu Xue, Xuedi Zhang, Li Long, Weimin Zhang, Jiaying Zhang, Xiaoli Bi, Junbiao Dai, Qiangfeng Zhang, Zhi John Lu and Guanjun Gao. Critical roles of long noncoding RNAs in Drosophila spermatogenesis . Genome Research , 2016 , 26 (9) : 1233-44 . doi: 10.1101/gr.199547.115 . [Epub ahead of print]
Xi He, Junbiao Dai* and Qingyu Wu*. Identification of Sporopollenin as the Outer Layer of Cell Wall in Microalga Chlorella protothecoides . Frontiers in Microbiology , 2016 , 7 : 1047 . doi: 10.3389/fmicb.2016.0104 . (*Co-corresponding author)
Yiran Qin, Chang Tan, Jiwei Lin, Qin Qin, Jianghaiyang He, Qingyu Wu, Yizhi Cai, Zhucheng Chen* and Junbiao Dai*. EcoExpress—Highly Efficient Construction and Expression of Multicomponent Protein Complexes in Escherichia coli . ACS Synthetic Biology , 2016 , 5 (11) : 1239-1246 . doi: 10.1021/acssynbio.5b00291
Jun-Jie Liu, Chu-Ya Niu, Yao Wu, Dan Tan, Yang Wang,Ming-Da Ye, Yang Liu, Wenwei Zhao, Ke Zhou, Quan-Sheng Liu, Junbiao Dai, Xuerui Yang, Meng-Qiu Dong, Niu Huang and Hong-Wei Wang. CryoEM structure of yeast cytoplasmic exosome complex . Cell Research , 2016 , 26 : 822-837 . doi: 10.1038/cr.2016.56
Andrea Martella*, Steven M. Pollard, Junbiao Dai, Yizhi Cai*. Mammalian synthetic biology: time for Big MACs . ACS Synthetic Biology , 2016 , 5 (10) : 1040-1049 . doi: 10.1021/acssynbio.6b00074
Chao Wu, Wei Xiong, Junbiao Dai* and Qingyu Wu*. Kinetic flux profiling dissects nitrogen utilization pathways in the oleaginous green alga Chlorella protothecoides . Journal of Phycology , 2016 , 52 : 116-124 . doi: 10.1111/jpy.12374 . (*Co-corresponding author)

2015

Ke Liu, Sha Hou, Junbiao Dai* and Zhirong Sun*. PyMut: a web tool for overlapping gene loss-of-function mutation design . EEE/ACM Transations on Computational Biology and Bioinformatics , 2015 , [Epub ahead of print] . doi: 10.1109/TCBB.2015.2505290 . [Epub ahead of print]
Yibo Xiao, Yue Lu, Junbiao Dai* and Qingyu Wu*. Industrial fermentation of Auxenochlorella protothecoides for production of biodiesel and its application in vehicle diesel engines . Frontiers in Bioengineering and Biotechnology , 2015 , 3 : 164 . doi: 10.3389/fbioe.2015.00164 . (*Co-corresponding author)
Dong Yan, Yun Wang, Tatsuya Murakami, Yue Shen, Jianhui Gong, Huifeng Jiang, David R. Smith, Jean-Francois Pombert, Junbiao Dai* and Qingyu Wu*. Auxenochlorella protothecoides and Prototheca wickerhamii plastid genome sequences give insight into the origins of non-photosynthetic algae . Scientific Reports , 2015 , 5 : 14465 . doi: 10.1038/srep14465 . (*Co-corresponding author)
Payel Sen, Weiwei Dang, Greg Donahue, Junbiao Dai, Jean Dorsey, Xiaohua Cao, Wei Liu, Kajia Cao, Rocco Perry, Jun Yeop Lee, Brian M. Wasko, Daniel T. Carr, Chong He, Brett Robison, John Wagner, Brian D. Gregory, Matt Kaeberlein, Brian K. Kennedy, Jef D. Boeke and Shelley L. Berger. H3K36 methylation promotes longevity by enhancing transcriptional fidelity . Genes and Development , 2015 , 29 (13) : 1362-76 . doi: 10.1101/gad.263707.115
Yakun Guo, Junkai Dong, Tong Zhou, Jamie Auxillos, Tianyi Li, Weimin Zhang, Lihui Wang, Yue Shen, Yisha Luo, Yijing Zheng, Jiwei Lin, Guo-Qiang Chen, Qingyu Wu, Yizhi Cai* and Junbiao Dai*. YeastFab: the design and construction of standard biological parts for metabolic engineering in Saccharomyces cerevisiae . Nucleic Acids Research , 2015 , 43 (13) : e88 . doi: 10.1093/nar/gkv464 . (*Co-corresponding author)
Antoine Simoneau1, Neda Delgoshaie, Ivana Celic, Junbiao Dai, Nebiyu Abshiru, Santiago Costantino, Pierre Thibault, Jef D. Boeke, Alain Verreault, and Hugo Wurtele. Interplay between histone H3 lysine 56 deacetylation and chromatin modifiers in response to DNA damage . Genetics , 2015 , 200 (1) : 185-205 . doi: 10.1534/genetics.115.175919
Chao Wu, Wei Xiong, Junbiao Dai* and Qingyu Wu*. Genome-based metabolic mapping and 13C flux analysis reveal systematic properties of an oleaginous microalga Chlorella protothecoides . Plant Physiology , 2015 , 167 (2) : 586-99 . doi: 10.1104/pp.114.250688 . (*Co-corresponding author)

2014

Li Zhao, Junbiao Dai* and Qingyu Wu*. Autophagy-like processes are involved in lipid droplet degradation in Auxenochlorella protothecoides during the heterotrophy-autotrophy transition . Frontiers in Plant Science , 2014 , 5 : 400 . doi: 10.3389/fpls.2014.00400 . (*Co-corresponding author)
Wei Wei, Huhu Xin, Bhaskar Roy, Junbiao Dai, Yungen Miao* and Guanjun Gao*. Heritable genome editing with CRISPR/Cas9 in the silkworm, Bombyx mori . PLoS One , 2014 , 9 (7) : e101210 . doi: 10.1371/journal.pone.0101210
Chunfang Gao, Yun Wang, Yue Shen, Dong Yan, Xi He, Junbiao Dai* and Qingyu Wu*. Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomes . BMC Genomics , 2014 , 15 : 582 . doi: 10.1186/1471-2164-15-582 . (*Co-corresponding author)
Yan Li, Wen Shao, Shouhong Jin, Tuan Xu, Xianli Jiang, Shihchi Yang, Zheyao Wang, Junbiao Dai and Qiong Wu*. Microgrooved poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) affects the phenotype of vascular smooth muscle cells through let-7a-involved regulation of actin dynamics . Biotechnology Letters , 2014 , 36 (10) : 2125-33 . doi: 10.1007/s10529-014-1562-x
Hanshuo Zhang, Juan Li, Sha Hou, Gancheng Wang, Mingjun Jiang, Changhong Sun, Xiongbing Hu, Fengfeng Zhuang, Zhifei Dai, Junbiao Dai* and Jianzhong Jeff Xi*. Engineered TAL Effector modulators for the large-scale gain-of-function screening . Nucleic Acids Research , 2014 , 42 (14) : e114 . doi: 10.1093/nar/gku535
Zhaoyu Xue, Mengda Ren, Menghua Wu, Junbiao Dai, Yikang S. Rong and Guanjun Gao. Efficient Gene Knock-out and Knock-in with Transgenic Cas9 in Drosophila . G3 (Bethesda) , 2014 , 4 (5) : 925-9 . doi: 10.1534/g3.114.010496

2013

Yue Lu, Junbiao Dai* and Qingyu Wu*. Photosynthesis-fermentation hybrid system to produce lipid feedstock for algal biofuel . Environmental Technology , 2013 , 34 (13-16) : 1869-76 . doi: 10.1080/09593330.2013.824011 . (*Co-corresponding author)
Tessie M. Ng, Tineke L. Lenstra, Nicole Duggan, Shuangying Jiang, Steven Ceto, Frank C. P. Holstege, Junbiao Dai, Jef D. Boeke and Sue Biggins. Kinetochore Function and Chromosome Segregation Rely On Critical Residues in Histones H3 and H4 in Budding Yeast . Genetics , 2013 , 195 (3) : 795-807 . doi: 10.1534/genetics.113.152082
Katherine L. Fiedler, Poonam Bheda, Junbiao Dai, Jef D. Boeke, Cynthia Wolberger and Robert J. Cotter. A quantitative analysis of histone methylation and acetylation isoforms from their deuteroacetylated derivatives: application to a series of knockout mutants . Journal of Mass Spectrometry , 2013 , 48 (5) : 608-15 . doi: 10.1002/jms.3198
Dong Yan, Junbiao Dai* and Qingyu Wu*. Characterization of an ammonium transporter in the oleaginous alga Chlorella protothecoides . Applied Microbiology and Biotechnology , 2013 , 97 (2) : 919-28 . doi: 10.1007/s00253-012-4534-x . (*Co-corresponding author)

2012

Junbiao Dai and Jef D. Boeke. Strain construction and screening methods for a yeast histone H3/H4 mutant library . Methods in Molecular Biology , 2012 , 833 : 1-14 . doi: 10.1007/978-1-61779-477-3_1
Zhongyu Xie*, Junbiao Dai*, Lunzhi Dai, Minjia Tan*, Zhongyi Cheng, Yeming Wu, Jef D. Boeke, and Yingming Zhao. Lysine succinylation and lysine malonylation in histones . Molecular & Cellular Proteomics , 2012 , 11 (5) : 100-7 . doi: 10.1074/mcp.M111.015875 . (*equal contribution)
Qiao Jiang, Li Zhao, Junbiao Dai* and Qingyu Wu*. Analysis of autophagy genes in microalgae: Chlorella as a potential model to study mechanism of autophagy . PloS One , 2012 , 7 (7) : e41826 . doi: 10.1371/journal.pone.0041826 . (*Co-corresponding author)

2011

Edel M. Hyland, Henrik Molina, Kunal Poorey, Chunfa Jie, Zhi Xie, Junbiao Dai, Jiang Qian, Stefan Bekiranov, David T. Auble, Akhilesh Pandey and Jef D. Boeke. An evolutionarily 'young' lysine residue in histone H3 attenuates transcriptional output in Saccharomyces cerevisiae . Genes Dev , 2011 , 25 (12) : 1306-19 . doi: 10.1101/gad.2050311
Jessica S. Dymond, Sarah M. Richardson, Candice E. Coombes, Timothy Babatz, Héloïse Muller, Narayana Annaluru, William J. Blake, Joy W. Schwerzmann, Junbiao Dai, Derek L. Lindstrom, Annabel C. Boeke, Daniel E. Gottschling, Srinivasan Chandrasegaran, Joel S. Bader and Jef D. Boeke. Synthetic chromosome arms function in yeast and generate phenotypic diversity by design . Nature , 2011 , 477 (7365) : 471-6 . doi: 10.1038/nature10403
Chao Peng, Zhike Lu, Zhongyu Xie, Zhongyi Cheng, Yue Chen, Minjia Tan, Hao Luo, Yi Zhang, Wendy He, Ke Yang, Bernadette M. M. Zwaans, Daniel Tishkoff, Linh Ho, David Lombard, Tong-Chuan He, Junbiao Dai, Eric Verdin, Yang Ye, and Yingming Zhao. The first identification of lysine malonylation substrates and its regulatory enzyme . Molecular & Cellular Proteomics , 2011 , 10 (12) : M111 012658 . doi: 10.1074/mcp.M111.012658

Earlier

Junbiao Dai, Edel M. Hyland, Anne Norris and Jef D. Boeke. Yin and Yang of histone H2B roles in silencing and longevity: a tale of two arginines . Genetics , 2010 , 186 (3) : 813-28 . doi: 10.1534/genetics.110.118489
Hailiang Huang, Alexandra M. Maertens, Edel M. Hyland, Junbiao Dai, Anne Norris, Jef D. Boeke and Joel S. Bader. HistoneHits: a database for histone mutations and their phenotypes . Genome Res , 2009 , 19 (4) : 674-81 . doi: 10.1101/gr.083402.108 . https://pubmed.ncbi.nlm.nih.gov/19218532/
Junbiao Dai, Edel M. Hyland, Daniel S. Yuan, Hailiang Huang, Joel S. Bader and Jef D. Boeke. Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants . Cell , 2008 , 134 (6) : 1066-78 . doi: 10.1016/j.cell.2008.07.019
Junbiao Dai, Weiwu Xie, Troy L Brady, Jiquan Gao and Daniel F. Voytas. Phosphorylation regulates integration of the yeast Ty5 retrotransposon into heterochromatin . Mol Cell , 2007 , 27 (2) : 289-299 . doi: 10.1016/j.molcel.2007.06.010
Yunxia Zhu, Junbiao Dai, Peter G. Fuerst and Daniel F. Voytas. Controlling integration specificity of a yeast retrotransposon . Proc Natl Acad Sci U S A , 2003 , 100 (10) : 1457805.0 . doi: 10.1073/pnas.1036705100
Paper Year
Year:
2023
2022
2021
2020
2019
2016
2015
2013
2012

2023

马英新，毛国斌，戴俊彪，中国发明专利， "一种适配体传感器、靶标物的识别方法及应用"，（专利申请号: CN202311148438.X）
马英新，毛国斌，戴俊彪，中国发明专利， "一种荧光硅点的合成方法、荧光硅点及应用"，（专利申请号: CN202310227436.3）
戴俊彪，崔君婷，黄小罗，中国发明专利， "档案存储方法、读取方法及相关装置"，（专利申请号: CN202310238624.6）
戴俊彪，强薇，黄小罗，中国发明专利， "基于波形特征存储的DNA编码方法、系统、设备以及存储介质"，（专利申请号: CN202310129992.7）
戴俊彪，姜双英，蔡泽霖，曾诚，中国发明专利， "一种 rDNA 阵列的快速构建方法及其在人工调控 rDNA 拷贝数中的应用"，（专利申请号: CN202311134312.7）

2022

马英新、毛国斌、戴俊彪，中国发明专利， "病毒核酸检测试剂、试剂盒、制备方法及其应用"，（专利申请号: 202211618312.X）
梅辉、王钰、黄小罗、戴俊彪、熊成鹤，中国发明专利， "一种基于天然和非天然碱基的DNA信息存储方法"，（专利申请号: CN202211594766.8）
戴俊彪，强薇，黄小罗，中国发明专利， "利用电磁波及声波进行DNA信息存储"，（专利申请号: 202211479929.8）
戴俊彪，强薇，黄小罗，中国发明专利， "DNA编码方法、解码方法、装置、终端设备及介质"，（专利申请号: 202210879914.4）
马英新，毛国斌，戴俊彪，中国发明专利， "用于ELISA检测SARS-CoV-2 S蛋白的比率荧光探针及检测方法"，（专利申请号: 202210776581.2）
戴俊彪，黄小罗，中国发明专利， "基于重组质粒DNA分子的数据信息存储方法"，（专利申请号: 202210668480.3）
戴俊彪，黄小罗，中国发明专利， "基于DNA分子介质的数据信息存储方法"，（专利申请号: 202210668109.7）
马英新，毛国斌，戴俊彪，中国发明专利， "用于检测新型冠状病毒的荧光探针及其制备方法与应用"，（专利申请号: CN202210514610.8）
黄奕翼，戴俊彪，中国发明专利， "用于DNA存储的编码方法及编码装置"，（专利申请号: CN202210441789.9）
黄奕翼，戴俊彪，中国发明专利 & PCT国际专利， "基于DNA存储的信息编码方法、装置、计算机设备及介质"，（专利申请号: CN202210432503.0; PCT/CN2022/091100）
戴俊彪，强薇，黄小罗，中国发明专利， "DNA编码方法、解码方法、装置、终端设备及介质"，（专利申请号: CN202210248376.9）

2021

马英新，毛国斌，戴俊彪，中国发明专利， "Si-FITC比率型荧光纳米探针的合成方法及其在新冠病毒抗原检测中的应用"，（专利申请号: CN 114381256 B；专利号：ZL2021 1 156717.5）
戴俊彪，强薇，黄小罗，中国发明专利， "数据存储方法、装置、终端设备及计算机可读存储介质"，（专利申请号: CN202111518514.2）
戴俊彪，强薇，黄小罗，中国发明专利， "基于DNA存储的编码方法、电子设备及可读存储介质"，（专利申请号: CN202111505985.X）
马英新，毛国斌，戴俊彪，中国发明专利， "一种镉锌硒量子点及其制备方法和应用、ALP检测方法"，（专利申请号: CN202111486409.5；专利号：ZL2021 1 1486409.5）
戴俊彪，卢明伟，黄小罗，中国发明专利， "数据纠错方法、装置及电子设备"，（专利申请号: CN202111271508.0）
戴俊彪，马英新，毛国斌，中国发明专利， "SARS-CoV-2病毒样颗粒的制备方法及其应用"，（专利申请号: CN202111271508.1）
戴俊彪，黄小罗，中国发明专利 & PCT国际专利， "DNA数据的存储方法、装置、设备及可读存储介质"，（专利申请号: CN202110929436.9; PCT/CN2021/112465）
戴俊彪，卢明伟，黄小罗，中国发明专利 & PCT国际专利， "编码方法、解码方法、装置、终端设备及可读存储介质"，（专利申请号: CN202110731619.X; PCT/CN2021/103179）
戴俊彪，黄小罗，中国发明专利 & PCT国际专利， "利用DNA进行数据存储的方法、装置及存储设备"，（专利申请号: CN202110688074.9；PCT/CN2021/101247）

2020

戴俊彪，高鲁娜，李敏，黄小罗，中国发明专利， "序列获取方法、装置、设备和存储介质"，（专利申请号: 202011476403.5）
戴俊彪，卢俊南，杨炜钐，温栾，林鑫，中国发明专利 & PCT国际专利， "IRES序列、IRES序列的应用和多顺反子表达载体"，（专利申请号: 202011453220.1; PCT/CN2020/135845）
戴俊彪，李敏，王洋，黄小罗，中国发明专利 & PCT国际专利， "编码方法、解码方法、装置及计算机可读存储介质"，（专利申请号: 202011468374.8;PCT/CN2020/136915）
黄小罗，戴俊彪，中国发明专利 & PCT国际专利， "用于DNA数据存储的二进制信息到碱基序列的编解码方法和编解码装置"，（专利申请号: CN202011343923.9; PCT/CN2020/131511）
李敏，戴俊彪，王洋，姜青山，罗周卿，姜双英，中国发明专利， "基于DNA的数据存储方法、数据恢复方法及终端设备"，（专利申请号: CN202011426871.1；PCT/CN2020/134847）
戴俊彪，黄小罗，中，中国发明专利， "一种利用DNA介质进行数据存储方法及装置"，（专利申请号: 202011193019.4）
戴俊彪、温栾、 陈佩双、 卢俊南、林鑫，中国发明专利 & PCT国际专利， "一种制造染色体结构变异的方法"，（专利申请号: 202011205066.6；PCT/CN2020/134673）
黄小罗，戴俊彪，中国发明专利 & PCT国际专利， "一种存有数据信息的DNA序列压缩/解压缩编码方法"，（专利申请号: 202011137220.0；PCT/CN2020/122721）
戴俊彪，姜双英，唐园玮，中国发明专利 & PCT国际专利， "基于合成基因和酿酒酵母同源重组机制的分子克隆方法"，（专利申请号: 202010983909.9；PCT/CN2020/133550）
戴俊彪，丁琛，程莉，秦兆宇，岳雪彤，中国发明专利 & PCT国际专利， "一种基于肽段的靶向蛋白质组精确定量方法"，（专利申请号: 202010507012.9；PCT/CN2020/135143）

2019

戴俊彪，李敏，方圆，姜双英，罗周卿，中国发明专利， "文本信息存储和读取方法及其装置"，（专利申请号: 201911051841.4）

2016

戴俊彪，吴庆余，乃哥麦提•伊加提，孙凯文，董俊凯，秦怡然，中国发明专利 & PCT国际专利， "将数据进行生物存储及还原的方法"，（专利申请号: 201610786435.2 ；PCT/CN2016/097398）

2015

戴俊彪，林继伟，秦怡然，吴庆余，何江海洋，中国发明专利， "一种利用短链引物阻遏提高DNA克隆及组装效率的方法"，（专利申请号: 201510849165.0）
戴俊彪，陈柱成， 吴庆余，秦怡然，林继伟，中国发明专利， "一种用于多元蛋白复合物表达的成套载体及其应用"，（专利申请号: 201510847331.3）
戴俊彪，林继伟，吴庆余，董俊凯，中国发明专利， "一种酿酒酵母新染色体及其构建方法与应用"，（专利申请号: 201510564754.4）
戴俊彪，林继伟，吴庆余，董俊凯，中国发明专利， "酿酒酵母标准化生物元件的构建及体外快速组装代谢途径的方法与应用"，（专利申请号: 201510138132.5）

2013

吴庆余、戴俊彪、卢悦，中国发明专利， "一种光合－发酵混合培养装置及其在培养含油微藻中的应用"
吴庆余、戴俊彪、卢悦，中国发明专利， "一种规模化收获微藻的方法及其专用装置"，（专利申请号: 201310285550.8）

2012

吴庆余、卢悦、戴俊彪、刘敏胜，中国发明专利， "一种提取异养小球藻中性油脂的方法"
Patent Year
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